Publication Theory of Biomolecular Matter

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Article(s) published in 2011

M. Soares e Silva, J. Alvarado, J. Nguyen, N. Georgoulia, B.M. Mulder and G.H. Koenderink, Self-organized patterns of actin filaments in cell-sized confinement, Soft Matter 7, 10631-10641 (2011).
E. Eggen, M.N. de Keijzer and B.M. Mulder, Self-regulation in tip growth : the role of cell wall ageing, J. Theor. Biol. 283, 113-121 (2011).
E.E. Deinum, S.H. Tindemans and B.M. Mulder, Taking directions: the role of microtubule-bound nucleation in the self-organization of the plant cortical array, Phys. Biol. 8, 056002 1-11 (2011).
D. Chaudhuri and A. Dhar, Stochastic pump of interacting particles, Europhys. Lett. 94, 30006 1-5 (2011).
D. Chaudhuri and B.M. Mulder, Size and shape of excluded volume polymers confined between parallel plates, Phys. Rev. E 83, 031803 1-14 (2011).
U. Basu, D. Chaudhuri and P.K. Mohanty, Biomodal response in periodically driven diffusive systems, Phys. Rev. E 83, 031115 1-6 (2011).

Article(s) published in 2010

S.H. Tindemans, R.J. Hawkins, E.E. Deinum, W. Allaerts and B.M. Mulder, Botsende buizen, NTvN 76, 382-386 (2010).
S.H. Tindemans and B.M. Mulder, Designing colloidal ground-state patterns using short-range isotropic interactions, Phys. Rev. E 82, 021404 1-10 (2010).
R.J. Hawkins, S.H. Tindemans and B.M. Mulder, Model for the orientational ordering of the plant microtubule cortical array, Phys. Rev. E 82, 011911 1-15 (2010).
F. Diotallevi, B.M. Mulder and J. Grasman, On the robustness of the geometrical model for cell wall deposition, Bull. Math. Biol. 72, 869-895 (2010).
S.H. Tindemans and B.M. Mulder, Microtubule length distributions in the presence of protein-induced severing, Phys. Rev. E 81, 031910 1-8 (2010).
S.H. Tindemans, R.J. Hawkins and B.M. Mulder, Survival of the aligned : ordering of the plant cortical microtubule array, Phys. Rev. Lett. 104, 058103 1-4 (2010).

Article(s) published in 2009

R. Gutierrez, J.J. Lindeboom, A.R. Paredez, A.M.C. Emons and D.W. Ehrhardt, Arabidopsis cortical microtubules position cellulose synthase delivery to the plasma membrane and interact with cellulose synthase trafficking compartments, Nature Cell Biology 11, 797 - 806 (2009).
S. de Nooijer, J. Wellink, B.M. Mulder and T. Bisseling, Non-specific interactions are sufficient to explain the position of heterochromatic chromocenters and nucleoli in interphase nuclei, Nucleic Acids Research 37, 3558–3568 (2009).

Article(s) published in 2008

J.J. Lindeboom, B.M. Mulder, J.W. Vos, T. Ketelaar and A.M.C. Emons, Cellulose microfibril deposition: coordinated activity at the plant plasma membrane, Journal of Microscopy 231, 192--200 (2008).
S. de Nooijer, T. Ketelaar and B.M. Mulder, Sphere size distributions from finite thickness sections: a forward approach employing a genetic algorithm, Journal of Microscopy 231, 257--264 (2008).
T. Ketelaar, M.E. Galway, B.M. Mulder and A.M.C. Emons, Rates of exocytosis and endocytosis in Arabidopsis root hairs and pollen tubes, Journal of Microscopy 231, 265--273 (2008).
B.M. Mulder, On growth and force, Science 322, 1643--1644 (2008).

Article(s) published in 2007

M. Cosentino Lagomarsino, C. Tanase, J.W. Vos, A.M.C. Emons, B.M. Mulder and M. Dogterom, Microtubule organization in three-dimensional confined geometries: evaluating the role of elasticity through a combined in vitro and modeling approach, Biophys. J. 92, 1046--1057 (2007).
F. Diotallevi and B.M. Mulder, The cellulose synthase complex: a polymerization driven supramolecular motor, Biophys. J. 92, 2666--2673 (2007).
C.E. Paraskevaidis, C. Papatriantafillou and B.M. Mulder, Interfacial wetting in the 4-state Potts model: a cluster approach, Physica A 375, 537--545 (2007).
A.M.C. Emons, H. Höfte and B.M. Mulder, Microtubules and cellulose microfibrils: how intimate is their relationship?, Trends in Plant Science 12, 279--281 (2007).

Article(s) published in 2006

S.H. Tindemans, N. Kern and B.M. Mulder, The diffusive vesicle supply center model for tip growth in fungal hyphae, Journal of Theoretical Biology 238, 937--948 (2006).
D.B. Lukatsky, B.M. Mulder and D. Frenkel, Designing ordered DNA-linked nanoparticle assemblies, Journal of Physics: Condensed Matter 18, S567--S580 (2006).
P.P.F. Wessels and B.M. Mulder, Isotropic-to-nematic transition in liquid-crystalline heteropolymers: I. Formalism and main-chain liquid-crystalline polymers, Journal of Physics: Condensed Matter 18, 9335--9357 (2006).
P.P.F. Wessels and B.M. Mulder, Isotropic-to-nematic transition in liquid-crystalline heteropolymers: II. Side-chain liquid-crystalline polymers, Journal of Physics: Condensed Matter 18, 9359--9374 (2006).

Article(s) published in 2005

T. Schilling, S. Pronk, B.M. Mulder and D. Frenkel, Monte Carlo study of hard pentagons, Physical Review E 71, 36138 1--6 (2005).
A. Zumdieck, M. Cosentino Lagomarsino, C. Tanase, K. Kruse, B.M. Mulder, M. Dogterom and F. Jülicher, Continuum description of the cytoskeleton: ring formation in the cell cortex, Physical Review Letters 95, 258103 1--4 (2005).
B.M. Mulder, The excluded volume of hard sphero-zonotopes, Molecular Physics 103, 1411--1424 (2005).

Article(s) published in 2004

P.P.F. Wessels and B.M. Mulder, Entropy-induces microphase separation in hard diblock copolymers, Physical Review E 70, 031503 1--16 (2004).
R. Blaak, B.M. Mulder and D. Frenkel, Cubatic phase for tetrapods, Journal of Chemical Physics 120, 5486--5492 (2004).
B.M. Mulder, J.H.N. Schel and A.M.C. Emons, How the geometrical model for plant cell wall formation enables the production of a random texture, Cellulose 11, 395--401 (2004).

Article(s) published in 2003

P.P.F. Wessels and B.M. Mulder, Continuous cross-over from oblate to prolate backbone conformations in nematic side chain polymers, Europhys. Lett. 64, 337--343 (2003).
P.P.F. Wessels and B.M. Mulder, Nematic homopolymers: from segmented to wormlike chains, Soft Materials 1, 313--342 (2003).

Article(s) published in 2002

M. Dogterom, M.E. Janson, C. Faivre-Moskalenko, A. van der Horst, J.W.J. Kerssemakers, C. Tanase and B.M. Mulder, Force generation by polymerizing microtubules, Appl. Phys. A 75, 331--336 (2002).
S. Koster, B.M. Mulder, M.C. Duursma, J.J. Boon, H.J.A. Philipsen, J.W. van Velde, M.W.F. Nielen, C.G. de Koster and R.M.A. Heeren, Quantitative analysis of copolymers: influence of the structure of the monomer on the ionization efficiency in electrospray ionization FTMS, Macromolecules 35, 4919--4928 (2002).
A.M.C. Emons, J.H.N. Schel and B.M. Mulder, The geometrical model for microfibril deposition: influence of the cell wall matrix, Plant Biology 4, 22--26 (2002).

Article(s) published in 2001

B.M. Mulder and A.M.C. Emons, A dynamical model for plant cell wall architecture formation, Journal of Mathematical Biology 42, 261--289 (2001).
B. Groh and B.M. Mulder, A closer look at crystallization of parallel hard cubes, Journal of Chemical Physics 114, 3653--3658 (2001).

Article(s) published in 2000

G.S. van Doorn, C. Tanase, B.M. Mulder and M. Dogterom, On the stall force for growing microtubules, Eur. Biophys. J. 29, 2--6 (2000).
A.M.C. Emons and B.M. Mulder, How the deposition of cellulose microfibrils builds cell wall architecture, Trends in Plant Science 5, 35--40 (2000).
B. Groh and B.M. Mulder, Hard-sphere solids near close packing: testing theories for crystallization, Physical Review E 61, 3811--3822 (2000).

Article(s) published in 1999

R. Blaak, D. Frenkel and B.M. Mulder, Do cylinders exhibit a cubatic phase?, Journal of Chemical Physics 110, 11652-11659 (1999).
B. Groh and B.M. Mulder, Why all crystals need not be bcc: Symmetry breaking at the liquid-solid transition revisited, Physical Review E 59, 5613-5620 (1999).

Article(s) published in 1998

B.M. Mulder, Harde fysica van de zachte materie, Afleiding 3, 8-11 (1998).
A.M.C. Emons and B.M. Mulder, The making of the architecture of the plant cell wall: How cells exploit geometry, PNAS 95, 7215-7219 (1998).
J. Chakrabarti and B.M. Mulder, Anchoring transitions of nematic liquid crystals in a lattice model, Molecular Crystals and Liquid Crystals 323, 97-112 (1998).
P.I.C. Teixeira, A.J. Masters and B.M. Mulder, Biaxial nematic order in the hard-boomerang fluid, Molecular Crystals and Liquid Crystals 323, 167-189 (1998).
R.H.H.G. van Roij, B.M. Mulder and M. Dijkstra, Phase behavior of binary mixtures of thick and thin hard rods, Physica A 261, 374-390 (1998).
C.E. Paraskevaidis, P.L. Taylor, B.M. Mulder and C. Papatriantafillou, Discrete anchoring: Bulk-substrate coupling in lattice models, Physica A 250, 517-435 (1998).
R. Blaak and B.M. Mulder, Phase diagram of Onsager crosses, Physical Review E 58, 5873-5884 (1998).
R. Blaak and B.M. Mulder, Virial coefficients of Onsager crosses, Molecular Physics 94, 401-405 (1998).
R.P. Sear and B.M. Mulder, The absence of a liquid phase in van der Waals fluids at high dimensionality, Molecular Physics 93, 181-185 (1998).

Article(s) published in 1997

A.M.C. Emons and B.M. Mulder, Plant Cell Wall Architecture: Cell Wall Defines Shape, Size, and Growth of Plant Cells, Comments Theor. Biol. 4, 115-131 (1997).
R.P. Sear and B.M. Mulder, Phase behavior of mixtures of wormlike micelles and mixtures of wormlike micelles with small colloidal particles, Journal of Physical Chemistry B 101, 4839-4844 (1997).
P.I.C. Teixeira and B.M. Mulder, Comment on ''Study of phase-separation dynamics by use of cell dynamical systems. I. Modeling'', Physical Review E 55, 3789-3791 (1997).

Article(s) published in 1996

R.H.H.G. van Roij and B.M. Mulder, High-density scaling solution to the Onsager model of lyotropic nematics, Europhys. Lett. 34, 201-206 (1996).
R.H.H.G. van Roij and B.M. Mulder, Demixing versus ordering in hard-rod mixtures, Physical Review E 54, 6430-6440 (1996).
P.I.C. Teixeira and B.M. Mulder, Numerical simulation of thermally induced phase separation in polymer-dispersed liquid crystals, Journal of Chemical Physics 105, 10145-10152 (1996).
R.H.H.G. van Roij and B.M. Mulder, Absence of high-density consolute point in nematic hard rod mixtures, Journal of Chemical Physics 105, 11237-11245 (1996).
R.P. Sear and B.M. Mulder, Phase behaviour of a symmetric binary mixture of hard rods, Journal of Chemical Physics 105, 7727-7734 (1996).
P.I.C. Teixeira and B.M. Mulder, Cell dynamics model of droplet formation in polymer-dispersed liquid crystals, Phys. Rev. E 53, 1805-1815 (1996).

Article(s) published in 1995

R.H.H.G. van Roij, P.G. Bolhuis, B.M. Mulder and D. Frenkel, Transverse interlayer order in lyotropic smectic liquid crystals, Phys. Rev. E 52, R1277-R1280 (1995).

Article(s) published in 1994

R.H.H.G. van Roij and B.M. Mulder, Demixing in a hard rod-plate mixture, J. Phys. II 4, 1763-1769 (1994).

Article(s) published in 1993

M.P. Allen, G.T. Evans, D. Frenkel and B.M. Mulder, Hard convex body fluids, Adv. Chem. Phys. 86, 1-166 (1993).