Publications Biophysics

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Article(s) published in 2011

A. Mashaghi, P.J. Vach and S.J. Tans, Noise reduction by signal combination in Fourier space applied to drift correction in optical tweezers, Rev. Sci. Instr. 82, 115103 (2011).
F.J. Poelwijk, P.D. Heyning, M.G.J. de Vos, D.J. Kiviet and S.J. Tans, Optimality and evolution of transcriptionally regulated gene expression, BMC Syst. Biol. 5, 128 1-34 (2011).
F.J. Poelwijk, M.G.J. de Vos and S.J. Tans, Tradeoffs and optimality in the evolution of gene regulation, Cell 146, 462-470 + supporting material (2011).
A.J. Jakobi, A. Mashaghi, S.J. Tans and E.G. Huizinga, Calcium modulates force sensing by the von Willebrand factor A2 domain, Nat. Commun. 2, 385 1-9 (2011).
I. Kusters, N. Mukherjee, M.R. de Jong, S.J. Tans, A. Koçer and A.J.M. Driessen, Taming membranes: functional immobilization of biological membranes in hydrogels, PLoS One 6, e20435 1-8 (2011).
F.J. Poelwijk, S. Tanase-Nicola, D.J. Kiviet and S.J. Tans, Reciprocal sign epistasis is a necessary condition for multi-peaked fitness landscapes, J. Theor. Biol. 272, 141-144 (2011).

Article(s) published in 2010

A. Dawid, D.J. Kiviet, M. Kogenaru, M.G.J. de Vos and S.J. Tans, Multiple peaks and reciprocal sign epistatis in an empirically determinded genotype-phenotype landscape, Chaos 20, 026105 1-7 (2010).
Ph. Bechtluft, N. Nouwen, S.J. Tans and A.J.M. Driessen, SecB a chaperone dedicated to protein translocation, Mol. BioSyst. 6, 620 - 627 (2010).
Ph. Bechtluft, A. Kedrov, D.-J. Slotboom, N. Nouwen, S.J. Tans and A.J.M. Driessen, Tight hydrophobic contacts with the SecB chaperone prevent folding of substrate proteins, Biochemistry 49, 2380–2388 (2010).

Article(s) published in 2009

M. Kogenaru, M.G.J. de Vos and S.J. Tans, Revealing evolutionary pathways by fitness landscape reconstruction, Crit. Rev. Biochem. Mol. Biol. 44, 169 - 174 (2009).
T. Kalkbrenner, A. Arnold and S.J. Tans, Internal dynamics of supercoiled DNA molecules, Biophys. J. 96, 4951–4955 (2009).
A.M. Adiciptaningrum, I.C. Blomfield and S.J. Tans, Direct observation of type 1 fimbrial switching, EMBO Rep. 10, 527–532 (2009).

Article(s) published in 2008

R.G.H. van Leeuwen and S.J. Tans, Moleculaire houdgreep ontrafeld, NTvN 74, 268--270 (2008).

Article(s) published in 2007

F.J. Poelwijk, D.J. Kiviet, D.M. Weinreich and S.J. Tans, Empirical fitness landscapes reveal accessible evolutionary paths, Nature 445, 383--386 (2007).
Ph. Bechtluft, R.G.H. van Leeuwen, M. Tyreman, D. Tomkiewicz, N. Nouwen, H.L. Tepper, A.J.M. Driessen and S.J. Tans, Direct observation of chaperone-induced changes in a protein folding pathway, Science 318, 1458--1461 (2007).

Article(s) published in 2006

F.J. Poelwijk, D.J. Kiviet and S.J. Tans, Evolutionary potential of a duplicated repressor-operator pair: simulating pathways using mutation data, PLoS Computational Biology 2, e58 0467-0475 (2006).
D. Tomkiewicz, N. Nouwen, R.G.H. van Leeuwen, S.J. Tans and A.J.M. Driessen, SecA supports a constant rate of preprotein translocation, Journal of Biological Chemistry 281, 15709--15713 (2006).
R. Hermsen, S.J. Tans and P.R. ten Wolde, Transcriptional regulation by competing transcription factor modules, PLoS Computational Biology 2, e164 1-9 (2006).

Article(s) published in 2003

S.J. Tans, R.G. Miedema, L.J. Geerligs, C. Dekker, J. Wu, D. Neher and G. Wegner, Electronic transport in monolayers of phthalocyanine polymers, Nanotechnology 14, 1043--1050 (2003).